Missing the claim notification window invalidates the claim for that period
For accounting periods starting on or after 1 April 2023, companies claiming R&D relief for the first time, or after a gap of more than three years, must <a href="https://www.gov.uk/guidance/tell-hmrc-that-youre-planning-to-claim-research-and-development-rd-tax-relief">notify HMRC within 6 months of the end of the accounting period</a>. The notification must be in place before the CT600 claim is filed. Miss the window and the claim is unavailable for that period, regardless of how strong the underlying qualifying activity is.